RNA Structure Ranking (RSR)

• Impact: Similar to proteins, RNA plays major functional roles (e.g., gene regulation) and can adopt well-defined 3D shapes. Yet the problem is data-poor, with only a few hundred known structures.
• Dataset description: Candidate models generated by FARFAR2 (Watkins & Das, 2019) for the first 21 released RNA Puzzle challenges (Cruz et al., 2012), a blind structure prediction competition for RNA.
• Task: We predict the root-mean-squared deviation (RMSD) from the ground truth structure.
• Splitting criteria: We split structures temporally by competition year.
• Downloads: The full dataset, split data, and split indices are available for download via Zenodo (doi:10.5281/zenodo.4961085)

References

Cruz, J. A., Blanchet, M. F., et al. (2012). RNA, 18(4), 610–625.

Watkins, A. M., Rangan, R., & Das, R. (2020). Structure, 28(8), 963-976.e6.

License

This dataset is licensed under a Creative Commons Attribution-ShareAlike 3.0 Unported (CC-SA) license.